Research

We study diverse topics related to bacterial survival under stress conditions

We use genetic approaches combined with "omics" analyses—genomics, transcriptomics, proteomics—and advanced microscopy, as well as bioinformatics examinations and mathematical modelling. Our research ranges from the population to the single-cell level and with cellular and animal models, we also study interactions with eukaryotic hosts.

Our primary focus is to uncover the basic molecular principles of bacterial persistence and how bacteria enter or exit this state. Understanding the underlying molecular mechanisms may help to develop new therapeutic approaches to combat pathogenic bacteria. From an evolutionary point of view, we explore how bacterial populations adapt persistence characteristics by genetic mutations during fluctuating antibiotic regimens. In this context, we also examine the link between persistence and the evolution of genetic antibiotic resistance. We focus on the model bacterium Escherichia coli and several pathogenic species including the ESKAPE pathogens. Work on the persistence regulator ObgE led to a second line of research that addresses cell cycle control.

Our translational research focuses on the discovery of novel antibiotics and bio-production of oleochemicals. A final line of research uses advanced genetic techniques to enhance survival of nitrogen-fixing rhizobia in a diverse collection of natural isolates. The major aim here is to improve survival of dormant Rhizobium in legume seed coatings by enhancing stress tolerance.